CPG ID : 20_0173_00 Gene Name : visual system homeobox 1
NCBI Gene ID : 30813 NCBI RefSeq : NM_014588 NCBI Protein: NP_055403
MANE Gene ID : ENSG00000100987 MANE Select ID : ENST00000376709 MANE Protein ID : ENSP00000365899
Chromosome : NC_000020.11 Start : 25075463 End : 25082141
Strand : - MANE Plus Clinical :
GENCODE V26 GTEx V8 GTEx V9 GSE GENCODE V34
MANE
Match
Transcript ID Tx-Type CDS
length
Rank TPM Exp
Tx%
Ref
Tx
Rank TPM Exp
Tx%
Ref
Tx
Rank TPM Exp
Tx%
Ref
Tx
Tx-Type CDS
length
PC
Tx%
APPRIS
ENST00000429762 protein_coding 906 1 0.70 48.38 2 0.76 34.26
ENST00000557285 retained_intron 0 2 0.31 21.54 4 0.10 4.58 1 4.63 92.54 retained_intron 0
ENST00000376709 protein_coding 1098 3 0.26 17.75 1 1.01 45.40 4 0.07 1.33 protein_coding 1098 25.00 P:1
ENST00000409285 nonsense_mediated_decay 843 4 0.12 8.62 3 0.33 14.90 3 0.11 2.13 nonsense_mediated_decay 843
ENST00000409958 nonsense_mediated_decay 657 5 0.04 2.82 6 0.00 0.08
ENST00000376707 protein_coding 720 6 0.01 0.48 5 0.02 0.79 2 0.20 3.99 protein_coding 720 75.00
ENST00000444511 protein_coding 711 7 0.01 0.41



GSE  ENSG00000100987_VSX1



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