CPG ID : 20_0173_00 Gene Name : visual system homeobox 1
NCBI Gene ID : 30813 NCBI RefSeq : NM_014588 NCBI Protein: NP_055403
MANE Gene ID : ENSG00000100987 MANE Select ID : ENST00000376709 MANE Protein ID : ENSP00000365899
Chromosome : NC_000020.11 Start : 25075463 End : 25082141
Strand : - MANE Plus Clinical :
GSE All Transcripts GTEx v9 GTEx v8
Rank TPM Exp
Tx%
Ref
Tx
Tau Tx-Type
(GENCODE v34)
CDS
length
PC
Tx%
APPRIS MANE
Select
Transcript ID Rank TPM Exp
Tx%
Ref
Tx
Rank TPM Exp
Tx%
Ref
Tx
Tx-Type
(GENCODE v26)
CDS
length
ENST00000429762 2 0.76 34.26 1 0.70 48.38 protein_coding 906
1 4.63 92.54 0.971 retained_intron 0 ENST00000557285 4 0.10 4.58 2 0.31 21.54 retained_intron 0
4 0.07 1.33 1.000 protein_coding 1098 25.00 P:1 M ENST00000376709 1 1.01 45.40 3 0.26 17.75 protein_coding 1098
3 0.11 2.13 0.943 nonsense_mediated_decay 843 ENST00000409285 3 0.33 14.90 4 0.12 8.62 nonsense_mediated_decay 843
ENST00000409958 6 0.00 0.08 5 0.04 2.82 nonsense_mediated_decay 657
2 0.20 3.99 0.931 protein_coding 720 75.00 ENST00000376707 5 0.02 0.79 6 0.01 0.48 protein_coding 720
ENST00000444511 7 0.01 0.41 protein_coding 711



GSE  ENSG00000100987_VSX1



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