CPG Cards

CPG ID : 16_0094_00	Gene Name : TSC complex subunit 2

NCBI Gene ID : 7249	NCBI RefSeq : NM_000548	NCBI Protein: NP_000539
MANE Gene ID : ENSG00000103197	MANE Select ID : ENST00000219476	MANE Protein ID : ENSP00000219476
Chromosome : NC_000016.10	Start : 2047985	End : 2089491
Strand : +	MANE Plus Clinical :

TEx_MST : TSC2

TREGT : TSC2

		GENCODE V26		GTEx V8				GTEx V9				GSE				GENCODE V34
MANE Match	Transcript ID	Tx-Type	CDS length	Rank	TPM	Exp Tx%	Ref Tx	Rank	TPM	Exp Tx%	Ref Tx	Rank	TPM	Exp Tx%	Ref Tx	Tx-Type	CDS length	PC Tx%	APPRIS
	ENST00000569110	protein_coding	1606	1	14.74	22.62	☀
	ENST00000569930	retained_intron	0	2	12.60	19.33		5	0.21	7.94		2	48.46	17.14		retained_intron	0
	ENST00000497886	retained_intron	0	3	8.63	13.25		7	0.16	6.09
	ENST00000401874	protein_coding	5223	4	4.76	7.30		11	0.04	1.49		1	84.93	30.05	☀	protein_coding	5223	50.62	A:2
	ENST00000568366	processed_transcript	0	5	4.33	6.64		19	0.00	0.14
	ENST00000568454	protein_coding	5256	6	2.35	3.61		4	0.21	8.05	☀
	ENST00000382538	protein_coding	5079	7	1.88	2.89		18	0.00	0.14		13	4.26	1.51		protein_coding	5079	2.54
	ENST00000463601	retained_intron	0	8	1.84	2.83		14	0.02	0.85		26	0.37	0.13		retained_intron	0
	ENST00000561695	retained_intron	0	9	1.81	2.78						38	0.03	0.01		retained_intron	0
	ENST00000439673	protein_coding	5115	10	1.51	2.31		17	0.01	0.25
	ENST00000488675	retained_intron	0	11	1.42	2.18		2	0.31	11.98		25	0.37	0.13		retained_intron	0
	ENST00000439117	nonsense_mediated_decay	327	12	1.41	2.16		12	0.03	1.13
	ENST00000461648	retained_intron	0	13	1.38	2.11		3	0.28	10.78		5	19.83	7.02		retained_intron	0
	ENST00000563346	retained_intron	0	14	1.07	1.65						24	0.40	0.14		retained_intron	0
	ENST00000463808	retained_intron	0	15	0.98	1.51		6	0.17	6.48		22	0.60	0.21		retained_intron	0
	ENST00000568238	retained_intron	0	16	0.91	1.39		8	0.06	2.46		30	0.17	0.06		retained_intron	0
☀	ENST00000219476	protein_coding	5424	17	0.76	1.16		10	0.06	2.13		10	5.49	1.94		protein_coding	5424	3.27	A:2
	ENST00000483020	nonsense_mediated_decay	108	18	0.64	0.98
	ENST00000490108	retained_intron	0	19	0.64	0.98		16	0.01	0.25		37	0.03	0.01		retained_intron	0
	ENST00000568692	retained_intron	0	20	0.62	0.95		1	0.94	35.88		14	3.39	1.20		retained_intron	0
	ENST00000350773	protein_coding	5355	21	0.34	0.53		13	0.03	0.98		8	8.63	3.05		protein_coding	5355	5.14	P:3
	ENST00000467949	protein_coding	590	22	0.26	0.39		15	0.02	0.68
	ENST00000562474	processed_transcript	0	23	0.15	0.23		9	0.06	2.29
	ENST00000432909	protein_coding	374	24	0.07	0.10
	ENST00000471143	nonsense_mediated_decay	97	25	0.05	0.08
	ENST00000568566	nonsense_mediated_decay	93	26	0.04	0.06

		GSE				GTEx V34
MANE Match	No Match Transcript ID	Rank	TPM	Exp Tx%	Ref Tx	Tx-Type	CDS length	PC Tx%	APPRIS
	ENST00000642797	3	26.18	9.26		protein_coding	5226	15.61	A:2
	ENST00000642936	4	23.91	8.46		protein_coding	5292	14.25	A:2
	ENST00000647042	6	13.55	4.79		retained_intron	0
	ENST00000642791	7	12.07	4.27		retained_intron	0
	ENST00000644043	9	8.37	2.96		protein_coding	5295	4.99	A:2
	ENST00000644335	11	4.53	1.60		protein_coding	5220	2.70	A:1
	ENST00000644222	12	4.52	1.60		retained_intron	0
	ENST00000644665	15	3.12	1.10		retained_intron	0
	ENST00000643745	16	1.67	0.59		nonsense_mediated_decay	1155
	ENST00000643088	17	1.33	0.47		protein_coding	5217	0.79	A:1
	ENST00000643426	18	1.18	0.42		retained_intron	0
	ENST00000646674	19	1.18	0.42		retained_intron	0
	ENST00000645552	20	1.14	0.40		retained_intron	0
	ENST00000643149	21	0.93	0.33		retained_intron	0
	ENST00000646557	23	0.43	0.15		retained_intron	0
	ENST00000647180	27	0.36	0.13		retained_intron	0
	ENST00000643533	28	0.33	0.12		retained_intron	0
	ENST00000643177	29	0.27	0.10		retained_intron	0
	ENST00000645192	31	0.17	0.06		retained_intron	0
	ENST00000642206	32	0.13	0.05		protein_coding	264	0.08
	ENST00000645024	33	0.11	0.04		retained_intron	0
	ENST00000642812	34	0.07	0.03		retained_intron	0
	ENST00000644278	35	0.07	0.02		retained_intron	0
	ENST00000646464	36	0.07	0.02		nonsense_mediated_decay	198

GSE ENSG00000103197_TSC2

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