CPG ID : 12_0061_00 Gene Name : chromodomain helicase DNA binding protein 4
NCBI Gene ID : 1108 NCBI RefSeq : NM_001273 NCBI Protein: NP_001264
MANE Gene ID : ENSG00000111642 MANE Select ID : ENST00000544040 MANE Protein ID : ENSP00000440542
Chromosome : NC_000012.12 Start : 6570082 End : 6607379
Strand : - MANE Plus Clinical :
TEx_MST : CHD4
TREGT : CHD4
GENCODE V26 GTEx V8 GTEx V9 GSE GENCODE V34
MANE
Match		 Transcript ID Tx-Type CDS
length		 Rank TPM Exp
Tx%		 Ref
Tx		 Rank TPM Exp
Tx%		 Ref
Tx		 Rank TPM Exp
Tx%		 Ref
Tx		 Tx-Type CDS
length		 PC
Tx%		 APPRIS
☀ ENST00000544040 protein_coding                    5718 2 16.87 23.55 ☀ 2 0.80 27.89 2 147.64 15.39 protein_coding 5739 16.56 A:1
ENST00000535717 retained_intron                    0 1 28.51 39.80 4 0.23 7.97 5 22.97 2.39 retained_intron 0
ENST00000357008 protein_coding                    5739 3 13.60 18.98 7 0.07 2.33
ENST00000542717 processed_transcript                    0 4 4.43 6.18 6 0.14 4.70
ENST00000540960 processed_transcript                    0 5 2.76 3.85 12 0.01 0.24
ENST00000535810 processed_transcript                    0 6 2.75 3.83 10 0.01 0.41
ENST00000544484 protein_coding                    5814 7 1.80 2.51 1 0.89 30.79 ☀
ENST00000536999 processed_transcript                    0 8 0.31 0.43 9 0.02 0.57
ENST00000545942 protein_coding                    1062 9 0.16 0.23 3 0.50 17.19 15 1.10 0.11 protein_coding 1062 0.12
ENST00000545083 retained_intron                    0 10 0.14 0.20 13 0.00 0.09 24 0.03 0.00 retained_intron 0
ENST00000537634 retained_intron                    0 11 0.13 0.18 8 0.02 0.59 16 1.00 0.10 retained_intron 0
ENST00000430771 retained_intron                    0 12 0.12 0.17 11 0.01 0.27 23 0.07 0.01 processed_transcript 0
ENST00000545584 protein_coding                    377 13 0.07 0.09 5 0.20 6.96 17 0.76 0.08 protein_coding 377 0.09

GSE GTEx V34
MANE
Match		 No Match
Transcript ID		 Rank TPM Exp
Tx%		 Ref
Tx		 Tx-Type CDS
length		 PC
Tx%		 APPRIS
ENST00000645022 1 608.96 63.48 ☀ protein_coding 5718 68.30 P:4
ENST00000645005 3 99.82 10.40 protein_coding 5745 11.20 A:1
ENST00000643815 4 25.50 2.66 protein_coding 4453 2.86
ENST00000647333 6 12.27 1.28 retained_intron 0
ENST00000647394 7 10.93 1.14 retained_intron 0
ENST00000644132 8 7.67 0.80 protein_coding 153 0.86
ENST00000647535 9 6.31 0.66 retained_intron 0
ENST00000647112 10 6.02 0.63 processed_transcript 0
ENST00000646070 11 2.55 0.27 processed_transcript 0
ENST00000642637 12 1.62 0.17 nonsense_mediated_decay 1375
ENST00000642686 13 1.33 0.14 retained_intron 0
ENST00000645199 14 1.14 0.12 processed_transcript 0
ENST00000645717 18 0.50 0.05 retained_intron 0
ENST00000642860 19 0.47 0.05 retained_intron 0
ENST00000646145 20 0.40 0.04 retained_intron 0
ENST00000644077 21 0.18 0.02 protein_coding 1681 0.02
ENST00000642893 22 0.10 0.01 nonsense_mediated_decay 51
ENST00000645991 25 0.03 nonsense_mediated_decay 222




GSE  ENSG00000111642_CHD4



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