CPG ID : 06_0605_00 Gene Name : collagen type IX alpha 1 chain
NCBI Gene ID : 1297 NCBI RefSeq : NM_001851 NCBI Protein: NP_001842
MANE Gene ID : ENSG00000112280 MANE Select ID : ENST00000357250 MANE Protein ID : ENSP00000349790
Chromosome : NC_000006.12 Start : 70216126 End : 70303084
Strand : - MANE Plus Clinical :
GENCODE V26 GTEx V8 GTEx V9 GSE GENCODE V34
MANE
Match
Transcript ID Tx-Type CDS
length
Rank TPM Exp
Tx%
Ref
Tx
Rank TPM Exp
Tx%
Ref
Tx
Rank TPM Exp
Tx%
Ref
Tx
Tx-Type CDS
length
PC
Tx%
APPRIS
ENST00000320755 protein_coding 2037 1 2.22 80.24 1 0.44 88.45 1 57.36 70.56 protein_coding 2037 73.01
ENST00000493682 retained_intron 0 2 0.21 7.49 3 0.01 1.60 5 0.24 0.30 retained_intron 0
ENST00000370496 protein_coding 987 3 0.11 3.90 4 0.00 0.75
ENST00000489611 processed_transcript 0 4 0.06 2.14
ENST00000489861 retained_intron 0 5 0.05 1.88
ENST00000357250 protein_coding 2766 6 0.05 1.81 2 0.05 9.20 2 21.20 26.08 protein_coding 2766 26.99 P:1
ENST00000447041 processed_transcript 0 7 0.03 1.04
ENST00000360859 processed_transcript 0 8 0.02 0.70 4 1.11 1.37 processed_transcript 0
ENST00000486080 processed_transcript 0 9 0.02 0.62 7 0.06 0.07 processed_transcript 0
ENST00000470652 retained_intron 0 10 0.00 0.18 6 0.07 0.08 retained_intron 0

GSE GTEx V34
MANE
Match
No Match
Transcript ID
Rank TPM Exp
Tx%
Ref
Tx
Tx-Type CDS
length
PC
Tx%
APPRIS
ENST00000644493 3 1.26 1.54 nonsense_mediated_decay 339



GSE  ENSG00000112280_COL9A1



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