CPG Cards

CPG ID : 09_0110_00	Gene Name : aprataxin

NCBI Gene ID : 54840	NCBI RefSeq : NM_001195248	NCBI Protein: NP_001182177
MANE Gene ID : ENSG00000137074	MANE Select ID : ENST00000379817	MANE Protein ID : ENSP00000369145
Chromosome : NC_000009.12	Start : 32972616	End : 33001628
Strand : -	MANE Plus Clinical :

TEx_MST : APTX

TREGT : APTX

		GENCODE V26		GTEx V8				GTEx V9				GSE				GENCODE V34
MANE Match	Transcript ID	Tx-Type	CDS length	Rank	TPM	Exp Tx%	Ref Tx	Rank	TPM	Exp Tx%	Ref Tx	Rank	TPM	Exp Tx%	Ref Tx	Tx-Type	CDS length	PC Tx%	APPRIS
	ENST00000379819	protein_coding	1071	1	2.59	13.63	☀	1	0.88	19.41	☀	26	0.24	0.55		protein_coding	1029	2.17	P:1
	ENST00000309615	protein_coding	867	2	2.28	12.02		6	0.29	6.39		6	2.87	6.62		protein_coding	867	25.96
	ENST00000397172	protein_coding	855	3	1.24	6.54		14	0.06	1.29		29	0.16	0.38		protein_coding	813	1.48
	ENST00000479656	nonsense_mediated_decay	150	4	1.20	6.32		5	0.33	7.18		3	3.41	7.87		nonsense_mediated_decay	150
	ENST00000464632	nonsense_mediated_decay	192	5	1.18	6.20		21	0.01	0.22		24	0.25	0.58		nonsense_mediated_decay	150
	ENST00000496030	retained_intron	0	6	1.15	6.05		10	0.12	2.63		14	0.83	1.92		retained_intron	0
	ENST00000476858	protein_coding	909	7	0.82	4.30		7	0.25	5.51		1	7.27	16.78	☀	protein_coding	867	65.78
	ENST00000478279	nonsense_mediated_decay	300	8	0.74	3.88		19	0.02	0.33		25	0.25	0.57		nonsense_mediated_decay	258
	ENST00000494649	nonsense_mediated_decay	150	9	0.74	3.88						18	0.44	1.01		nonsense_mediated_decay	150
	ENST00000460945	processed_transcript	0	10	0.73	3.85		11	0.11	2.34
	ENST00000495360	nonsense_mediated_decay	150	11	0.68	3.59		2	0.65	14.17
	ENST00000379825	protein_coding	921	12	0.65	3.41		4	0.54	11.90
	ENST00000467331	nonsense_mediated_decay	150	13	0.64	3.37						32	0.09	0.21		nonsense_mediated_decay	150
	ENST00000465003	nonsense_mediated_decay	258	14	0.59	3.12		8	0.23	5.03		11	1.15	2.66		nonsense_mediated_decay	150
	ENST00000468275	protein_coding	1029	15	0.57	3.01		23	0.01	0.13
	ENST00000485479	nonsense_mediated_decay	150	16	0.50	2.64		15	0.05	1.05		21	0.36	0.84		nonsense_mediated_decay	150
☀	ENST00000379817	protein_coding	1029	17	0.43	2.28		25	0.00	0.04		17	0.48	1.10		protein_coding	1029	4.30	P:1
	ENST00000480031	nonsense_mediated_decay	159	18	0.37	1.96		20	0.01	0.26		37	0.03	0.08		nonsense_mediated_decay	159
	ENST00000460940	nonsense_mediated_decay	150	19	0.29	1.52		22	0.01	0.20
	ENST00000483148	nonsense_mediated_decay	258	20	0.25	1.34		18	0.02	0.34		31	0.12	0.27		nonsense_mediated_decay	258
	ENST00000472896	nonsense_mediated_decay	150	21	0.25	1.33		13	0.07	1.45		16	0.52	1.21		nonsense_mediated_decay	159
	ENST00000486724	processed_transcript	0	22	0.23	1.22		16	0.03	0.70		27	0.23	0.54		processed_transcript	0
	ENST00000473270	processed_transcript	0	23	0.18	0.94		3	0.62	13.61		10	1.67	3.84		processed_transcript	0
	ENST00000482687	nonsense_mediated_decay	579	24	0.18	0.93		17	0.03	0.65
	ENST00000494973	retained_intron	0	25	0.14	0.75		26	0.00	0.04		23	0.27	0.62		retained_intron	0
	ENST00000474658	nonsense_mediated_decay	224	26	0.11	0.58		12	0.08	1.77		15	0.62	1.43		nonsense_mediated_decay	207
	ENST00000463596	protein_coding	1029	27	0.08	0.44
	ENST00000436040	protein_coding	1029	28	0.08	0.43		9	0.15	3.27
	ENST00000489583	processed_transcript	0	29	0.05	0.24		24	0.00	0.04		13	0.87	2.00		processed_transcript	0
	ENST00000473221	protein_coding	650	30	0.04	0.20		27	0.00	0.02
	ENST00000379812	protein_coding	596	31	0.00	0.02
	ENST00000379813	protein_coding	1011	32	0.00	0.01
	ENST00000477119	protein_coding	467	33	0.00	0.01

		GSE				GTEx V34
MANE Match	No Match Transcript ID	Rank	TPM	Exp Tx%	Ref Tx	Tx-Type	CDS length	PC Tx%	APPRIS
	ENST00000673181	2	6.13	14.15		retained_intron	0
	ENST00000672476	4	3.40	7.85		retained_intron	0
	ENST00000672553	5	2.93	6.77		retained_intron	0
	ENST00000673487	7	2.47	5.70		nonsense_mediated_decay	150
	ENST00000672615	8	1.72	3.97		retained_intron	0
	ENST00000672493	9	1.71	3.95		retained_intron	0
	ENST00000673211	12	1.05	2.42		retained_intron	0
	ENST00000672535	19	0.41	0.96		nonsense_mediated_decay	150
	ENST00000672244	20	0.40	0.93		nonsense_mediated_decay	417
	ENST00000673333	22	0.35	0.81		retained_intron	0
	ENST00000672286	28	0.22	0.50		retained_intron	0
	ENST00000672152	30	0.15	0.34		retained_intron	0
	ENST00000673171	33	0.08	0.18		retained_intron	0
	ENST00000673360	34	0.06	0.13		nonsense_mediated_decay	207
	ENST00000673485	35	0.05	0.11		retained_intron	0
	ENST00000673598	36	0.04	0.08		protein_coding	507	0.32
	ENST00000673114	38	0.03	0.08		retained_intron	0

GSE ENSG00000137074_APTX

TPM Log2 Log10